output
input
Peak_counts_classification-2
Peak_counts_classification-1
Peak_counts_BeforeAfter_Filtering
Annotated_peak_number
mirmap
global
Report Degradome Analysis Oliver-2022_MF-4_Conf-0_95_Oliver-2022.html
...
Pooled_0_95_4_4
Comparison_SRR10759114-SRR10759112_and_SRR10759115-SRR10759113_0_95_4_4
Classification_SRR10759112-SRR10759114_and_SRR10759113-SRR10759115_0_95_4_4
...
t_SRR10759112_c_SRR10759114_0.95_4_2_test_heightfreq.txt
t_SRR10759112_c_SRR10759114_0.95_4_2_test.tab
t_SRR10759112_c_SRR10759114_0.95_4_2_ctl_heightfreq.txt
t_SRR10759112_c_SRR10759114_0.95_4_2
Logs
...
02-fastqQC_filtered
01-fastqQC_raw
R
pyDegradome_NonPeaks_coordinates
pyDegradome_maxTx_Scaled
pyDegradome_maxPeak_Scaled
Peak_sequences
miRNA_seq
Degradome_reads
Summary
Dplots
Alignment
03-Report
02-PyDegradome_pooled
01-PyDegradome_processed
08-salmon_transcript
07-htseq_genomic
06_4-bigwig_transcript
06_3-bam_transcript
06_2-sam_transcript
06_1-sam_transcript
05-PyDegradome
04_3-bigwig_genomic
04_2-sam_genomic
04_1-bam_genomic
03-Supp_info
03-fastq_No-rRNA
02-fastq_Len-Trim-Q_filtered
01-fastq
00-Quality_control
Supporting_data
output_02
output_01
Degradome-Oliver-2022
markmap
markmap