libs
mirmap
05-Report.Rmd
A-GetSizeFactor.R
05-Report_main.R
05-Report_code.R
04-GetPeakSeq.R
03-Drawing_Dplots.R
02-Filtering_Classification_Pooling.R
01-Annotation-shared_peak_classification.R
00-Initialization.R
PyDegradome
miRmap-1.1
Rmd
05-Peak_miRNA_mirmap.py
05-Peak_miRNA_alignment.py
05-Get_miRNA_seqs.sh
00-Variable_setup.sh
00-Process_Annotation_files.sh
00-mirTarget_alignment.py
00-mirmap_miRNA_alignment.py
00-Generate_Bowtie_index.sh
00-Download-genetic-data.sh
00-Anaconda_setup.sh
Arabidopsis_thaliana.TAIR10.55_sorted.gtf
Arabidopsis_thaliana.TAIR10.55_repr.gff3
Arabidopsis_thaliana.TAIR10.55.gtf
Arabidopsis_thaliana.TAIR10.55.gff3
Third_party
R
sh_py
Index
Fasta
Compressed
Annotation
Oliver-2022_vars.txt
Degradome_Oliver-2022.txt
02-Degradome.sh
01-Degradome.sh
Scripts
Genetic_data
Env_variables
<input-dir>/
markmap
markmap